retina
Class OIDffAllAnalyzer

java.lang.Object
  |
  +--retina.OIDAnalyzer
        |
        +--retina.OIDffAllAnalyzer
All Implemented Interfaces:
OIDBaseAnalyzer

public class OIDffAllAnalyzer
extends OIDAnalyzer

Optical Imaging of the Retina first frame analyzer for all frames (not only stimulus frames) but average across conditions. So you end up with sequences showing the average difference over all repeats with the baseline, and an average first frame image. Copyright (c) 1999-2004, Michael Abramoff. All rights reserved.


Fields inherited from class retina.OIDAnalyzer
bag, functionName, scriptProcessor
 
Constructor Summary
OIDffAllAnalyzer()
           
OIDffAllAnalyzer(ScriptProcessor scriptProcessor)
           
 
Method Summary
 void analyze(float[][] a, float[][] regEstimates, int frameWidth, java.lang.String directory, java.lang.String name)
          Analyze a series of OID frames a.
 
Methods inherited from class retina.OIDAnalyzer
exit, init, main, prefersRegistration, printInfo, printUsage, saveAnalysis, toString
 
Methods inherited from class java.lang.Object
, clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

OIDffAllAnalyzer

public OIDffAllAnalyzer()

OIDffAllAnalyzer

public OIDffAllAnalyzer(ScriptProcessor scriptProcessor)
Method Detail

analyze

public void analyze(float[][] a,
                    float[][] regEstimates,
                    int frameWidth,
                    java.lang.String directory,
                    java.lang.String name)
Analyze a series of OID frames a. First frame analysis in which all frames are shown as a stack.
Overrides:
analyze in class OIDAnalyzer
Parameters:
a - a float[][] with the reflectance frames.
regEstimates - a float [][] with the estimates of alignment for each frame with a[0].
frameWidth - the width in pixels of the frames in a
directory - the name of the directory where the result should go.
name - the name(s) of the file(s) on which a is based